2023
Shinfuku MS, Domeignoz-Horta LA, Choudoir MJ, Frey S, DeAngelis KM. (2023) Season, not long-term warming, affects the relationship between ecosystem function and microbial diversity. bioRxiv doi:10.1101/2023.08.14.553264 [link]
Choudoir MJ, Narayanan A, Rodriguez-Ramos D, Simoes R, Efroni A, Sondrini A, DeAngelis KM. (2023) Pangenomes reveal genomic signatures of microbial adaptation to chronic soil warming. bioRxiv doi: 10.1101/2023.03.16.532972 [link]
2022
Schaal H, Choudoir MJ, Diwanji V, Stoffolano J, DeAngelis KM. (2022) Chitosan diet alters the microbiome of adult house flies. bioRxiv doi: 10.1101/2022.08.31.502951 [link]
Choudoir MJ & EM Eggleston. (2022) Reciprocal Inclusion of Microbiomes and Environmental Justice Contributes Solutions to Global Environmental Health Challenges. mSystems e01462-21. [link]
Choudoir MJ & DeAngelis KM. (2022) A framework for integrating microbial dispersal modes into soil ecosystem ecology. iScience 25(13): 103887 [link]
Hariharan J, Choudoir MJ, Diebold P, Panke-Buisse K, Buckley DH. (2022) Streptomyces apricus sp. nov., isolated from soil. International Journal of Systematic and Evolutionary Microbiology 72(1): 005178. [link]
2021
Ishaq SL, Parada FJ, Wolf PG, Bonilla CY, Carney MA, Benezra A, Wissel E, Friedman M, DeAngelis KM, Robinson JM, Fahimipour AK, Manus MB, Grieneisen L, Dietz LG, Pathak A, Chauhan A, Kuthyar S, Stewart JD, Dasari MR, Nonnamaker E, Choudoir M, Horve PF, Zimmerman NB, Kozik AJ, Darling KW, Romero Olivares AL, Hariharan J, Farmer N, Maki KA, Collier JL, O’Doherty KC, Letourneau J, Kline J, Moses PL, Morar N. (2021) Introducing the Microbes and Social Equity Working Group: considering the microbial components of social, environmental, and health justice. mSystems 6:e00471-21. [link]
Choudoir MJ, Järvenpää MJ, Marttinen P, Buckley DH. (2021) A non-adaptive demographic mechanism for genome expansion in Streptomyces. bioRxiv doi: 10.1101/2021.01.09.426074. [link]
2020
McBride SG, Choudoir M, Fierer N, Strickland M. (2020) Volatile organic compounds from leaf litter decomposition alter soil microbial communities and carbon dynamics. Ecology 10.1002/ecy.3130. [pdf]
2019
Choudoir M, Rossabi S, Gebert M, Helmig D, Fierer N. (2019) A phylogenetic and functional perspective on volatile organic compound production by Actinobacteria. mSystems 4:e00298-18. [pdf]
2018
Choudoir MJ & Buckley DH. (2018) Phylogenetic conservatism of thermal traits explains dispersal limitation and genomic differentiation of Streptomyces sister-taxa. ISME J 12:2176-2186. [pdf]
Rossabi S, Choudoir MJ, Helmig D, Hueber J, Fierer N. (2018) Volatile organic compound emissions from soil following wetting events. J Geophys Res Biogeosci 123:1988-2001. [pdf]
Choudoir MJ, Pepe-Ranney C, Buckley DH. (2018) Diversification of secondary metabolite biosynthetic gene clusters coincides with lineage divergence in Streptomyces. Antibiotics 7:12. [pdf]
2017
Choudoir MJ, Barberán A, Menninger HL, Dunn RR, Fierer N. (2017) Variation in range size and dispersal capabilities of microbial taxa. Ecology 99:322-334. [pdf]
Choudoir MJ, Panke-Buisse K, Andam CP, Buckley DH. (2017) Genome surfing as driver of microbial genomic diversity. Trends Microbiol 25:624-636. [pdf]
2016
Choudoir MJ, Doroghazi JR, Buckley DH. (2016) Latitude delineates patterns of biogeography in terrestrial Streptomyces. Environ Microbiol 18:4931-4945. [pdf]
Adam CP, Doroghazi JR, Campbell AN, Kelly PJ, Choudoir MJ, Buckley DH. (2016) A latitudinal diversity gradient in terrestrial bacteria of the genus Streptomyces. mBio 7:e02200-15. [pdf]
Andam CP, Choudoir MJ, Nguyen AVH, Park HS, Buckley DH. (2016) Contributions of ancestral inter-species recombination to the genetic diversity of extant Streptomyces lineages. ISME J 10:1731–1741. [pdf]
2009-2012
Choudoir MJ, Campbell AN, Buckley DH. (2012) Grappling with Proteus: population level approaches to understanding microbial diversity. Front Microbiol 3:336. [pdf]
Raphael BH, Choudoir MJ, Lúquez C, Fernández R, Maslanka SE. (2010) Sequence diversity of genes encoding botulinum neurotoxin type F. Appl Environ Microbiol 76:4805-4812. [pdf]
Kramer LC, Choudoir MJ, Wielgus SM, Bhaskar PB, Jiang J. (2009) Correlation between transcript abundance of the RB gene and the level of the RB-mediated late blight resistance in potato. Mol Plant Microbe Interact 22:447-455. [pdf]